OpenScience / Software / Life Sciences / Bioinformatics



GEOSS

Posted on September 5, 2001 by Dan Gezelter

Gene Expression Open Source System (GEOSS) is a complete system used to store and analyze gene expression data. It has a relational database, a web interface, and an analysis suite. There is also a repository for each user’s files, and … Continue reading →

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Wise2

Posted on March 1, 2001 by Dan Gezelter

Wise2 is package that is focused on comparing DNA sequences at the level of its conceptual translation, regardless of sequencing error and introns. Find Wise2 at: http://www.sanger.ac.uk/Software/Wise2/

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SeqPup

Posted on February 28, 2001 by Dan Gezelter

SeqPup is a biological sequence editor and analysis program. Find SeqPup at: http://iubio.bio.indiana.edu/IUBio-Software+Data/molbio/seqpup/java/

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Pfam

Posted on February 27, 2001 by Dan Gezelter

Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Find Pfam at: http://pfam.sanger.ac.uk/

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HMMER

Posted on February 27, 2001 by Dan Gezelter

Profile hidden Markov models for biological sequence analysis. Find HMMER at: http://hmmer.janelia.org/

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Geanfammer

Posted on February 27, 2001 by Dan Gezelter

geanfammer contains divclus which divides proteinclusters into more correct domain level clusters Find Geanfammer at: http://www.mrc-lmb.cam.ac.uk/genomes/geanfammer.html

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Dynamite

Posted on February 26, 2001 by Dan Gezelter

Dynamite is a code generating language developed for sequence comparison methods. Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/

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gBioSeq

Posted on February 26, 2001 by Dan Gezelter

Biological sequence (ADN, protein) editor for GTK/Linux Find gBioSeq at: http://www.bioinformatics.org/project/?group_id=94

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autoseq

Posted on February 25, 2001 by Dan Gezelter

autoseq is a small package of base calling software for ABI automated DNA sequencers. It is intended as a starting point for researchers interested in new base calling algorithms. Find autoseq at: http://harts.net/reece/autoseq/

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Bioperl

Posted on February 24, 2001 by Dan Gezelter

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. Find Bioperl at: http://bio.perl.org/

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