Category Archives: Life Sciences

Taverna Workbench and Server

Taverna is an open source domain independent Workflow Management System a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and funded through the OMII-UK. Taverna has a guaranteed funding till … Continue reading

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PhyloSort

A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units. Find PhyloSort at: http://phylosort.sourceforge.net

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SwisTrack: Multi-Object Video Tracking Software

SwisTrack allows for tracking multiple objects such as insects or robots from a video stream provided by a file or directly from a camera. SwisTrack’s user interface allows adjusting parameters on the flight, and thus allow to find an optimal … Continue reading

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ODIN

ODIN – Object Oriented Development Interface for NMR is a framework for rapid prototyping of magnetic resonance imaging sequences. Find ODIN at: http://od1n.sourceforge.net

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VLinux

VLinux is a Linux Live CD for Bioinformatics. It contains various sequence and structure analysis tools. The following packages are included in the present VLinux distribution. EMBOSS,GDE,Rasmol,PyMOL,GROMACS,Phylip,Arka/Genpak,ClustalW/ClustalX,TCoffee, Seaview,Garlic, Ramachandran Plot viewer, Primer, XMolCalc, NJPlot etc Find VLinux at: http://bioinformatics.org/vlinux

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GENtle

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more. Find GENtle at: http://gentle.magnusmanske.de

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ROC.KIT

ROC.KIT is an open-source Macintosh application allowing for automated calculation of ROC curves (Receiver-Operating-Charateristic) from continuous medical data like laboratory results. Find ROC.KIT at: http://roc-kit.sourceforge.net

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SPINA

SPINA (Structure Parameter Inference Approach) is a method to calculate constant structure parameters of endocrine feedback control systems from hormone levels obtained in vivo. Software is available for different platforms. Find SPINA at: http://link.medinn.med.uni-muenchen.de/spina/en/

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Genomorama

Genomorama is a software program for interactively displaying multiple genomes. It provides a powerful yet easy to use interface that leverages the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the … Continue reading

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DeltaStat

DeltaStat performs statistical calculations on data from 2D gel experiments. DeltaStat combines the power of R, a language for statistics, with the efficiency of a relational database to handle the large amount of data generated in proteomics experiments. Find DeltaStat … Continue reading

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