### Categories

- Conferences (3)
- education (10)
- Fun (58)
- Meta (12)
- Open Access (10)
- Open Data (13)
- open science (34)
- Policy (49)
- Science (135)
- Software (634)
- Acoustics (3)
- Engineering (1)
- Physical (1)
- Speech Communication (2)
- Structural (1)

- Anthropology and Archaeology (3)
- Artificial Life (9)
- Astronomy (21)
- Aviation and Aeronautics (2)
- Chemistry (131)
- Analytical (4)
- Atmospheric (1)
- Biochemistry (6)
- Biophysical (3)
- Chemical Information (3)
- Crystallography (2)
- Electrochemistry (1)
- Molecule Viewers and Editors (39)
- Organic (2)
- Synthesis (1)

- Periodic Tables (3)
- Physical (1)
- Kinetics (1)

- Polymers (1)
- Spectroscopy (9)
- NMR (5)

- Surfaces (1)
- Theoretical and Computational (45)

- Cognitive Science (3)
- Neural Networks (2)

- Complex Systems (2)
- Computer Science (22)
- Algorithms And Computational Theory (2)
- Artificial Intelligence (4)
- Data Communication (4)
- Information Retrieval (1)
- Knowledge Discovery and Data Mining (3)
- Languages (1)
- Fortran (1)

- Measurement and Evaluation (1)
- Simulation and Modeling (2)
- Software Engineering (2)
- Symbolic and Algebraic Manipulation (1)

- Earth Sciences (19)
- Geology and Geophysics (5)
- Hydrology (5)
- Meteorology (1)
- Oceanography (3)

- Energy (3)
- Engineering (24)
- Forensics (2)
- Geography (12)
- Information Technology (1)
- Life Sciences (60)
- Bioinformatics (34)
- Ecology (5)
- Evolution and Population Genetics (3)
- Statistical (1)
- Theoretical (1)

- Genetics (9)
- Population (1)

- Medical Sciences (7)
- Physiology (2)

- Linguistics (2)
- Mathematics (108)
- Abstract Algebra (9)
- Combinatorics (1)
- Differential Equations (17)
- Fluid Dynamics (7)
- Ordinary (3)
- Partial (7)

- Dynamical Systems (4)
- Education (1)
- Geometry (3)
- Linear Algebra (26)
- Number Theory (6)
- Numerical Methods (5)
- Optimization (12)
- Probability (1)
- Set Theory (1)
- Statistics (8)
- Topology (1)

- Measurements and Units (3)
- Nanotechnology (2)
- Physics (30)
- Astrophysics (1)
- Atomic and Molecular (1)
- Computational (2)
- Condensed Matter (4)
- Dynamics (2)
- Fluid (1)

- High Energy (4)
- Magnetism (1)
- Materials (1)
- Nuclear (4)
- Optics (5)
- Plasma (1)

- Required Reading and Other Sites (25)
- Space (3)
- Tools (56)
- Numerical Libraries (8)
- Random Number Generators (2)
- Visualization (18)
- 2D Plotting (8)
- 3D Plotting (2)

- Acoustics (3)
- Uncategorized (4)

# OpenScience / Software / Life Sciences

## Taverna Workbench and Server

Taverna is an open source domain independent Workflow Management System a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and funded through the OMII-UK. Taverna has a guaranteed funding till … Continue reading

Posted in Bioinformatics, Tools
Leave a comment

## PhyloSort

A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units. Find PhyloSort at: http://phylosort.sourceforge.net

Posted in Bioinformatics
Leave a comment

## SwisTrack: Multi-Object Video Tracking Software

SwisTrack allows for tracking multiple objects such as insects or robots from a video stream provided by a file or directly from a camera. SwisTrack’s user interface allows adjusting parameters on the flight, and thus allow to find an optimal … Continue reading

Posted in Engineering, Life Sciences
Leave a comment

## ODIN

ODIN – Object Oriented Development Interface for NMR is a framework for rapid prototyping of magnetic resonance imaging sequences. Find ODIN at: http://od1n.sourceforge.net

Posted in Medical Sciences
Leave a comment

## VLinux

VLinux is a Linux Live CD for Bioinformatics. It contains various sequence and structure analysis tools. The following packages are included in the present VLinux distribution. EMBOSS,GDE,Rasmol,PyMOL,GROMACS,Phylip,Arka/Genpak,ClustalW/ClustalX,TCoffee, Seaview,Garlic, Ramachandran Plot viewer, Primer, XMolCalc, NJPlot etc Find VLinux at: http://bioinformatics.org/vlinux

Posted in Bioinformatics
Leave a comment

## GENtle

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more. Find GENtle at: http://gentle.magnusmanske.de

Posted in Bioinformatics
Leave a comment

## ROC.KIT

ROC.KIT is an open-source Macintosh application allowing for automated calculation of ROC curves (Receiver-Operating-Charateristic) from continuous medical data like laboratory results. Find ROC.KIT at: http://roc-kit.sourceforge.net

Posted in Medical Sciences
Leave a comment

## SPINA

SPINA (Structure Parameter Inference Approach) is a method to calculate constant structure parameters of endocrine feedback control systems from hormone levels obtained in vivo. Software is available for different platforms. Find SPINA at: http://link.medinn.med.uni-muenchen.de/spina/en/

Posted in Medical Sciences
Leave a comment

## Genomorama

Genomorama is a software program for interactively displaying multiple genomes. It provides a powerful yet easy to use interface that leverages the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the … Continue reading

Posted in Bioinformatics
Leave a comment

## DeltaStat

DeltaStat performs statistical calculations on data from 2D gel experiments. DeltaStat combines the power of R, a language for statistics, with the efficiency of a relational database to handle the large amount of data generated in proteomics experiments. Find DeltaStat … Continue reading

Posted in Bioinformatics
Leave a comment