### Categories

- Conferences (3)
- education (10)
- Fun (58)
- Meta (12)
- Open Access (10)
- Open Data (13)
- open science (34)
- Policy (48)
- Science (135)
- Software (633)
- Acoustics (3)
- Engineering (1)
- Physical (1)
- Speech Communication (2)
- Structural (1)

- Anthropology and Archaeology (3)
- Artificial Life (9)
- Astronomy (21)
- Aviation and Aeronautics (2)
- Chemistry (131)
- Analytical (4)
- Atmospheric (1)
- Biochemistry (6)
- Biophysical (3)
- Chemical Information (3)
- Crystallography (2)
- Electrochemistry (1)
- Molecule Viewers and Editors (39)
- Organic (2)
- Synthesis (1)

- Periodic Tables (3)
- Physical (1)
- Kinetics (1)

- Polymers (1)
- Spectroscopy (9)
- NMR (5)

- Surfaces (1)
- Theoretical and Computational (45)

- Cognitive Science (3)
- Neural Networks (2)

- Complex Systems (2)
- Computer Science (22)
- Algorithms And Computational Theory (2)
- Artificial Intelligence (4)
- Data Communication (4)
- Information Retrieval (1)
- Knowledge Discovery and Data Mining (3)
- Languages (1)
- Fortran (1)

- Measurement and Evaluation (1)
- Simulation and Modeling (2)
- Software Engineering (2)
- Symbolic and Algebraic Manipulation (1)

- Earth Sciences (19)
- Geology and Geophysics (5)
- Hydrology (5)
- Meteorology (1)
- Oceanography (3)

- Energy (3)
- Engineering (24)
- Forensics (2)
- Geography (12)
- Information Technology (1)
- Life Sciences (60)
- Bioinformatics (34)
- Ecology (5)
- Evolution and Population Genetics (3)
- Statistical (1)
- Theoretical (1)

- Genetics (9)
- Population (1)

- Medical Sciences (7)
- Physiology (2)

- Linguistics (2)
- Mathematics (108)
- Abstract Algebra (9)
- Combinatorics (1)
- Differential Equations (17)
- Fluid Dynamics (7)
- Ordinary (3)
- Partial (7)

- Dynamical Systems (4)
- Education (1)
- Geometry (3)
- Linear Algebra (26)
- Number Theory (6)
- Numerical Methods (5)
- Optimization (12)
- Probability (1)
- Set Theory (1)
- Statistics (8)
- Topology (1)

- Measurements and Units (3)
- Nanotechnology (2)
- Physics (30)
- Astrophysics (1)
- Atomic and Molecular (1)
- Computational (2)
- Condensed Matter (4)
- Dynamics (2)
- Fluid (1)

- High Energy (4)
- Magnetism (1)
- Materials (1)
- Nuclear (4)
- Optics (5)
- Plasma (1)

- Required Reading and Other Sites (25)
- Space (3)
- Tools (56)
- Numerical Libraries (8)
- Random Number Generators (2)
- Visualization (18)
- 2D Plotting (8)
- 3D Plotting (2)

- Acoustics (3)
- Uncategorized (4)

# OpenScience / Software / Tools

## Tabula

If you’ve ever tried to do anything with data provided to you in PDFs, you know how painful it is — there’s no easy way to copy-and-paste rows of data out of PDF files. Today we discovered a great open … Continue reading

Posted in Tools
Leave a comment

## sciNote

sciNote is a free and open source online lab notebook suitable for academia and industry. sciNote is not just an ELN but it is a scientific platform, where every scientist can safely store their data and share it with their … Continue reading

Posted in Tools
Leave a comment

## ELN – Electronic Lab Notebook

ELN is an Electronic Lab Notebook for scientists of all stripes ELN is great for: taking notes during experiments since it automatically saves your input every 10 seconds so that your notes will never be lost; keeping track of data … Continue reading

Posted in Tools
Leave a comment

## SciDraw

SciDraw is a system for preparing publication-quality scientific figures with Mathematica. SciDraw provides both a framework for structuring figures and tools for generating their content. SciDraw helps with generating figures involving mathematical plots, data plots, and diagrams. The package allows … Continue reading

Posted in Visualization
Leave a comment

## codenode

Codenode is a notebook-style browser based interface to Python and Sage. It lets you write and run code, create plots, and organize your work into sections. You can manage many notebooks – add, delete, sort, and create folders. You can … Continue reading

Posted in Tools
Leave a comment

## Multigraph

Multigraph is a program for creating 2-dimensional scientific data graphs in web pages. It can read data in a variety of formats, and allows you to customize the appearance of the graph to your liking. Multigraph provides interactive pan and … Continue reading

Posted in Visualization
Leave a comment

## XDAT: A Tool to plot Parallel Coordinates

XDAT (x-dimensional data analysis tool) reads column-based data in text / csv format and plots it using parallel coordinates. It is written in Java and released under the GPL. Find XDAT: A Tool to plot Parallel Coordinates at: http://www.xdat.org/

Posted in 2D Plotting
Leave a comment

## Icy

Icy is an image analysis software primarily targeted at biological needs. It provides high-quality tools for biological image processing tasks, such as filtering (linear, nonlinear, morphological, etc.), cell segmentation, particles detection, tracking, multiple-class thresholding, measurements, microscope control, etc. It is … Continue reading

Posted in Tools
Leave a comment

## Eigen

Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. It provides high performance, arbitrary sized (and sparse) matricies, and excellent numerical stability. It is available under a LGPL3+/GPL2+ dual license. Find Eigen at: … Continue reading

Posted in Numerical Libraries
Leave a comment

## Veusz

A publication-quality scientific plotting package built in Python, NumPy, and PyQt4. Find Veusz at: http://home.gna.org/veusz/

Posted in Tools
Leave a comment