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Author Archives: Dan Gezelter
OGSA-DAI
OGSA-DAI is an open source framework for executing complex data management scenarios (including data access, update, transformation, integration and delivery) involving distributed databases. It supports relational, XML and file resources. The supported functionality, data resources and presentation layers can all … Continue reading
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Sysmo db
SysMO-DB is a web-based platform for finding, sharing and exchanging Data, Models and Processes in Systems Biology. It was designed to support the SysMO Consortium (Systems Biology for Micro-Organisms), but the principles and methods employed are equally applicable to other … Continue reading
Posted in Life Sciences
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myExperiment
myExperiment makes it easy to find, use and share scientific workflows and other Research Objects, and to build communities. Find myExperiment at: http://www.myexperiment.org/
MethodBox
Finding the variables you need to support a particular research question can be time consuming. Wading through hundreds of pages of PDF documents, codebooks and metadata and then trying to find the exact column in a huge spreadsheet can be … Continue reading
Posted in Information Retrieval
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Biocatalogue
The BioCatalogue is a registry of biological Web Services. The BioCatalogue website is freely accessible to the world as it is searchable and indexable to search engines. It provides an open platform for biological Web Services registration, annotation and monitoring. … Continue reading
Posted in Bioinformatics
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myExperiment
The myExperiment Virtual Research Environment enables you and your colleagues to share digital items associated with your research in particular it enables you to share and execute scientific workflows. You can use www.myexperiment.org to find publicly shared workflows. If you … Continue reading
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BioCatalogue – the Life Sciences Web Service Registry
The BioCatalogue is a registry of biological Web Services. The BioCatalogue website is freely accessible to the world as it is searchable and indexable to search engines. It provides an open platform for biological Web Services registration, annotation and monitoring. … Continue reading
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Taverna Workbench and Server
Taverna is an open source domain independent Workflow Management System a suite of tools used to design and execute scientific workflows. Taverna has been created by the myGrid project and funded through the OMII-UK. Taverna has a guaranteed funding till … Continue reading
Posted in Bioinformatics, Tools
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SciDAVis
SciDAVis is a free application for Scientific Data Analysis and Visualization. It combines a shallow learning curve and an intuitive, easy-to-use graphical user interface with powerful features such as scriptability and extensibility. SciDAVis runs on GNU/Linux, Windows and MacOS X; … Continue reading
Posted in Visualization
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Ascalaph
Package of molecular graphics and dynamics with an interface to quantum chemistry. GPL Find Ascalaph at: http://www.biomolecular-modeling.com/Ascalaph/index.html