Categories
- Conferences (3)
- education (10)
- Fun (58)
- Meta (12)
- Open Access (10)
- Open Data (13)
- open science (34)
- Policy (48)
- Science (135)
- Software (633)
- Acoustics (3)
- Engineering (1)
- Physical (1)
- Speech Communication (2)
- Structural (1)
- Anthropology and Archaeology (3)
- Artificial Life (9)
- Astronomy (21)
- Aviation and Aeronautics (2)
- Chemistry (131)
- Analytical (4)
- Atmospheric (1)
- Biochemistry (6)
- Biophysical (3)
- Chemical Information (3)
- Crystallography (2)
- Electrochemistry (1)
- Molecule Viewers and Editors (39)
- Organic (2)
- Synthesis (1)
- Periodic Tables (3)
- Physical (1)
- Kinetics (1)
- Polymers (1)
- Spectroscopy (9)
- NMR (5)
- Surfaces (1)
- Theoretical and Computational (45)
- Cognitive Science (3)
- Neural Networks (2)
- Complex Systems (2)
- Computer Science (22)
- Algorithms And Computational Theory (2)
- Artificial Intelligence (4)
- Data Communication (4)
- Information Retrieval (1)
- Knowledge Discovery and Data Mining (3)
- Languages (1)
- Fortran (1)
- Measurement and Evaluation (1)
- Simulation and Modeling (2)
- Software Engineering (2)
- Symbolic and Algebraic Manipulation (1)
- Earth Sciences (19)
- Geology and Geophysics (5)
- Hydrology (5)
- Meteorology (1)
- Oceanography (3)
- Energy (3)
- Engineering (24)
- Forensics (2)
- Geography (12)
- Information Technology (1)
- Life Sciences (60)
- Bioinformatics (34)
- Ecology (5)
- Evolution and Population Genetics (3)
- Statistical (1)
- Theoretical (1)
- Genetics (9)
- Population (1)
- Medical Sciences (7)
- Physiology (2)
- Linguistics (2)
- Mathematics (108)
- Abstract Algebra (9)
- Combinatorics (1)
- Differential Equations (17)
- Fluid Dynamics (7)
- Ordinary (3)
- Partial (7)
- Dynamical Systems (4)
- Education (1)
- Geometry (3)
- Linear Algebra (26)
- Number Theory (6)
- Numerical Methods (5)
- Optimization (12)
- Probability (1)
- Set Theory (1)
- Statistics (8)
- Topology (1)
- Measurements and Units (3)
- Nanotechnology (2)
- Physics (30)
- Astrophysics (1)
- Atomic and Molecular (1)
- Computational (2)
- Condensed Matter (4)
- Dynamics (2)
- Fluid (1)
- High Energy (4)
- Magnetism (1)
- Materials (1)
- Nuclear (4)
- Optics (5)
- Plasma (1)
- Required Reading and Other Sites (25)
- Space (3)
- Tools (56)
- Numerical Libraries (8)
- Random Number Generators (2)
- Visualization (18)
- 2D Plotting (8)
- 3D Plotting (2)
- Acoustics (3)
- Uncategorized (4)
Author Archives: Dan Gezelter
New Software: Data Mining
Some new software is in our Knowledge Discovery and Data Mining section. I can remember a time when “data mining” was a bit of an epithet in science (like “fishing expedition”), but now it has become an established way of … Continue reading
Researching Open Science
I don’t know how I missed this before, but there’s a really interesting article from 2006 up at the Harvard Business School “Working Knowledge” site. It details some of Karim Lakhani‘s results from a paper called ‘The Value of Openness … Continue reading
Cool Radiohead interactive video
So, I like Radiohead. A lot. Kid A has been in permanent rotation in my music collection for a couple of years now. But their new video for House of Cards is something else entirely. It was generated from 3-D … Continue reading
Automated out-of-plane finder?
The code I’ve been working on has some cool features. If you give it a list of atoms and bonds, it automatically figures out bend and dihedral interactions using simple graph concepts. That is, if the molecule has a bond … Continue reading
FooCamp? BarCamp?
One of the more interesting aspects of the New Communication Channels workshop was something called the “SciBarCamp” that was organized by Jen Dodd. I’d never been at a meeting which used this format before, and I was a bit dubious … Continue reading
Cool finds at the NCCB2008 workshop
Some of the cooler online resources that have been discussed at the NCCB2008 workshop: OpenWetWare The international genetically engineered machines competition (IGEM) Registry of Standard Biological Parts Nature Precedings Proteopedia The Open Protein Structure Annotation Network (TOPSAN) SciVee.tv FriendFeed
New Communication Channels for Biology Workshop
I’m going to be giving a talk at the “New Communication Channels for Biology” Workshop run by the CalIT2 folks at UCSD. The workshop is Thursday and Friday, and there are going to be some interesting folks like Michael Nielsen, … Continue reading
Posted in Policy, Science
3 Comments
Praat: doing Phonetics by Computer
Praat is an integrated software workbench for studying phonetics on real-life sound data. Find Praat: doing Phonetics by Computer at: http://www.fon.hum.uva.nl/praat/
Posted in Linguistics
Leave a comment
OpenSim
OpenSim is an open-source software system that lets users develop models of musculoskeletal structures and create dynamic simulations of movement. The software provides a platform on which the biomechanics community can build a library of simulations that can be exchanged, … Continue reading
Posted in Engineering
Leave a comment
SimTK core
The SimTK Core project collects together all the hardware-independent binaries needed for the various SimTK Core subprojects. These include SimTKcommon, Simmath, Simmatrix, Simbody, CPodes, IPopt, and much more. See the individual projects for descriptions. Find SimTK core at: https://simtk.org/home/simtkcore
Posted in Engineering
Leave a comment