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Author Archives: Dan Gezelter
gOpenMol
gOpenMol is the graphical interface into the OpenMol set of computational chemistry programs Find gOpenMol at: http://www.csc.fi/english/pages/g0penMol
Posted in Molecule Viewers and Editors
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HMMER
Profile hidden Markov models for biological sequence analysis. Find HMMER at: http://hmmer.janelia.org/
Posted in Bioinformatics
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Lennard-Jones Gas Simulation
Lennard-Jones Gas Simulation Find Lennard-Jones Gas Simulation at: http://www.ibiblio.org/pub/Linux/science/chemistry/!INDEX.html
Posted in Molecular Dynamics
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Pfam
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Find Pfam at: http://pfam.sanger.ac.uk/
Posted in Bioinformatics
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LigBuilder
LigBuilder is a multiple-purposed program written for structure-based drug design procedure. Based on the three-dimensional structure of the target protein, it can automatically build ligand molecules within the binding pocket and subsequently screen them Find LigBuilder at: http://mdl.ipc.pku.edu.cn/drug_design/work/ligbuilder.html
Posted in Biochemistry
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Microsat
Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account. Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/
Posted in Genetics
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MOLMOL
MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. Find MOLMOL at: http://www.mol.biol.ethz.ch/wuthrich/software/molmol/
Posted in Molecule Viewers and Editors
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Cn3D
Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI’s Entrez retrieval service. Find Cn3D at: http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml
Posted in Molecule Viewers and Editors
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DNA/GUI
A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI
Posted in Genetics
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Dynamite
Dynamite is a code generating language developed for sequence comparison methods. Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/
Posted in Bioinformatics
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