XNBC

Posted on March 1, 2001 by Dan Gezelter

XNBC is a software package for simulating biological neural networks.
Find XNBC at: http://www.b3e.jussieu.fr/xnbc/

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Posted in Artificial Life | Leave a comment

XMolCalc

Posted on March 1, 2001 by Dan Gezelter

A molecular mass calculator for Unix/X11
Find XMolCalc at: http://www.unizh.ch/oci/group.pages/hesse/xmolcalc/index.html

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Posted in Chemistry | Leave a comment

XMakemol

Posted on March 1, 2001 by Dan Gezelter

XMakemol is a program written for UN*X operating systems in ANSI C using the X, Xt and Motif libraries. It can be used to view and manipulate atomic and molecular data given in xyz format.
Find XMakemol at: http://www.nongnu.org/xmakemol/

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Posted in Molecule Viewers and Editors | Leave a comment

XBS

Posted on March 1, 2001 by Dan Gezelter

XBS is a simple but very useful program for plotting ball-and-sticks models of molecules or crystals under the X Window system.
Find XBS at: http://www.ccl.net/chemistry/resources/software/X-WINDOW/xbs/index.shtml

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Wise2

Posted on March 1, 2001 by Dan Gezelter

Wise2 is package that is focused on comparing DNA sequences at the level of its conceptual translation, regardless of sequencing error and introns.
Find Wise2 at: http://www.sanger.ac.uk/Software/Wise2/

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NanoCAD

Posted on February 28, 2001 by Dan Gezelter

A freeware nanotech design system in Java
Find NanoCAD at: http://server.ccl.net/cca/software/SOURCES/JAVA/ncad/unpacked/ncad.html

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Populations

Posted on February 28, 2001 by Dan Gezelter

Population genetic software (individuals or populations distances, phylogenetic trees)
Find Populations at: http://bioinformatics.org/~tryphon/populations/

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PHYLIP

Posted on February 28, 2001 by Dan Gezelter

PHYLIP Phylogeny Inference Package computer programs for inferring phylogenies
Find PHYLIP at: http://evolution.genetics.washington.edu/phylip.html

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PAML

Posted on February 28, 2001 by Dan Gezelter

Phylogenetic Analysis by Maximum Likelihood
Find PAML at: http://abacus.gene.ucl.ac.uk/software/paml.html

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Posted in Genetics | Leave a comment

ORTEP

Posted on February 28, 2001 by Dan Gezelter

Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure Illustrations
Find ORTEP at: http://www.ornl.gov/ortep/ortep.html

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Posted in Crystallography | Leave a comment