gOpenMol

Posted on February 27, 2001 by Dan Gezelter

gOpenMol is the graphical interface into the OpenMol set of computational chemistry programs
Find gOpenMol at: http://www.csc.fi/english/pages/g0penMol

Share
Posted in Molecule Viewers and Editors | Leave a comment

HMMER

Posted on February 27, 2001 by Dan Gezelter

Profile hidden Markov models for biological sequence analysis.
Find HMMER at: http://hmmer.janelia.org/

Share
Posted in Bioinformatics | Leave a comment

Lennard-Jones Gas Simulation

Posted on February 27, 2001 by Dan Gezelter

Lennard-Jones Gas Simulation
Find Lennard-Jones Gas Simulation at: http://www.ibiblio.org/pub/Linux/science/chemistry/!INDEX.html

Share
Posted in Molecular Dynamics | Leave a comment

Pfam

Posted on February 27, 2001 by Dan Gezelter

Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains.
Find Pfam at: http://pfam.sanger.ac.uk/

Share
Posted in Bioinformatics | Leave a comment

LigBuilder

Posted on February 27, 2001 by Dan Gezelter

LigBuilder is a multiple-purposed program written for structure-based drug design procedure. Based on the three-dimensional structure of the target protein, it can automatically build ligand molecules within the binding pocket and subsequently screen them
Find LigBuilder at: http://mdl.ipc.pku.edu.cn/drug_design/work/ligbuilder.html

Share
Posted in Biochemistry | Leave a comment

Microsat

Posted on February 27, 2001 by Dan Gezelter

Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account.
Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/

Share
Posted in Genetics | Leave a comment

MOLMOL

Posted on February 27, 2001 by Dan Gezelter

MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR.
Find MOLMOL at: http://www.mol.biol.ethz.ch/wuthrich/software/molmol/

Share
Posted in Molecule Viewers and Editors | Leave a comment

Cn3D

Posted on February 26, 2001 by Dan Gezelter

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI’s Entrez retrieval service.
Find Cn3D at: http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

Share
Posted in Molecule Viewers and Editors | Leave a comment

DNA/GUI

Posted on February 26, 2001 by Dan Gezelter

A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms
Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI

Share
Posted in Genetics | Leave a comment

Dynamite

Posted on February 26, 2001 by Dan Gezelter

Dynamite is a code generating language developed for sequence comparison methods.
Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/

Share
Posted in Bioinformatics | Leave a comment