OpenScience / Software / Life Sciences / Bioinformatics

Mavric is a python module for the manipulation and visualization of phylogenetic trees. Find Mavric at: http://www.bioinformatics.org/mavric/

GP and Arka are lightweight programs for manipulation of DNA / RNA / protein sequences. Find Genpak at: http://www.bioinformatics.org/genpak/

DEgenerate Oligonucleotide Design & Analysis System (DEODAS), for designing and electronically analyzing consensus-degenerate oligonucleotides Find DEODAS at: http://deodas.sourceforge.net/

E-CELL Simulation Environment (E-CELL SE) is a software package for cellular and biochemical modeling and simulation. Find E-CELL at: http://www.bioinformatics.org/e-cell/