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OpenScience / Software / Life Sciences / Genetics
PAL: Phylogenetic Analysis Library
The PAL project is a collaborative effort to provide a high quality Java library for use in molecular evolution and phylogenetics. Updates of PAL are released in regular intervals. At present (version 1.4) PAL consists of approximately 200 public classes/interfaces … Continue reading
Posted in Genetics
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GEOSS
Gene Expression Open Source System (GEOSS) is a complete system used to store and analyze gene expression data. It has a relational database, a web interface, and an analysis suite. There is also a repository for each user’s files, and … Continue reading
Posted in Bioinformatics, Genetics
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PomBase
An AceDB database for the fission yeast Schizosaccharomyces pombe. Find PomBase at: http://www.genedb.org/genedb/pombe/blast.jsp
Posted in Genetics
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PHYLIP
PHYLIP Phylogeny Inference Package computer programs for inferring phylogenies Find PHYLIP at: http://evolution.genetics.washington.edu/phylip.html
Posted in Genetics
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PAML
Phylogenetic Analysis by Maximum Likelihood Find PAML at: http://abacus.gene.ucl.ac.uk/software/paml.html
Posted in Genetics
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Populations
Population genetic software (individuals or populations distances, phylogenetic trees) Find Populations at: http://bioinformatics.org/~tryphon/populations/
Posted in Population
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Microsat
Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account. Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/
Posted in Genetics
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DNA/GUI
A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI
Posted in Genetics
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AceDB
Acedb is a genome database system. Acedb is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. Find AceDB at: http://www.acedb.org/
Posted in Genetics
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