OpenScience / Software / Life Sciences / Genetics



PAL: Phylogenetic Analysis Library

Posted on May 26, 2004 by Dan Gezelter

The PAL project is a collaborative effort to provide a high quality Java library for use in molecular evolution and phylogenetics. Updates of PAL are released in regular intervals. At present (version 1.4) PAL consists of approximately 200 public classes/interfaces … Continue reading →

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GEOSS

Posted on September 5, 2001 by Dan Gezelter

Gene Expression Open Source System (GEOSS) is a complete system used to store and analyze gene expression data. It has a relational database, a web interface, and an analysis suite. There is also a repository for each user’s files, and … Continue reading →

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PomBase

Posted on February 28, 2001 by Dan Gezelter

An AceDB database for the fission yeast Schizosaccharomyces pombe. Find PomBase at: http://www.genedb.org/genedb/pombe/blast.jsp

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PHYLIP

Posted on February 28, 2001 by Dan Gezelter

PHYLIP Phylogeny Inference Package computer programs for inferring phylogenies Find PHYLIP at: http://evolution.genetics.washington.edu/phylip.html

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PAML

Posted on February 28, 2001 by Dan Gezelter

Phylogenetic Analysis by Maximum Likelihood Find PAML at: http://abacus.gene.ucl.ac.uk/software/paml.html

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Populations

Posted on February 28, 2001 by Dan Gezelter

Population genetic software (individuals or populations distances, phylogenetic trees) Find Populations at: http://bioinformatics.org/~tryphon/populations/

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Microsat

Posted on February 27, 2001 by Dan Gezelter

Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account. Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/

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DNA/GUI

Posted on February 26, 2001 by Dan Gezelter

A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI

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AceDB

Posted on February 25, 2001 by Dan Gezelter

Acedb is a genome database system. Acedb is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. Find AceDB at: http://www.acedb.org/

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