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OpenScience / Software / Life Sciences
PAML
Phylogenetic Analysis by Maximum Likelihood Find PAML at: http://abacus.gene.ucl.ac.uk/software/paml.html
Posted in Genetics
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Pfam
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Find Pfam at: http://pfam.sanger.ac.uk/
Posted in Bioinformatics
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HMMER
Profile hidden Markov models for biological sequence analysis. Find HMMER at: http://hmmer.janelia.org/
Posted in Bioinformatics
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Geanfammer
geanfammer contains divclus which divides proteinclusters into more correct domain level clusters Find Geanfammer at: http://www.mrc-lmb.cam.ac.uk/genomes/geanfammer.html
Posted in Bioinformatics
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Microsat
Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account. Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/
Posted in Genetics
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gBioSeq
Biological sequence (ADN, protein) editor for GTK/Linux Find gBioSeq at: http://www.bioinformatics.org/project/?group_id=94
Posted in Bioinformatics
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Dynamite
Dynamite is a code generating language developed for sequence comparison methods. Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/
Posted in Bioinformatics
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DNA/GUI
A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI
Posted in Genetics
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autoseq
autoseq is a small package of base calling software for ABI automated DNA sequencers. It is intended as a starting point for researchers interested in new base calling algorithms. Find autoseq at: http://harts.net/reece/autoseq/
Posted in Bioinformatics
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BioMail
new references from Medline to your e-mail account Find BioMail at: http://biomail.sourceforge.net/biomail/
Posted in Medical Sciences
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