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OpenScience / Software / Life Sciences
AceDB
Acedb is a genome database system. Acedb is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. Find AceDB at: http://www.acedb.org/
Posted in Genetics
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Ecolab
Ecolab is both the name of a software package and a research project that is looking at the dynamics of evolution. Find Ecolab at: http://ecolab.sourceforge.net/
Bioperl
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. Find Bioperl at: http://bio.perl.org/
Posted in Bioinformatics, Life Sciences
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Spatial Modeling Environment
The Spatial Modeling Environment (SME) is an integrated environment for high performance spatial modeling which transparently links icon-based modeling tools with advanced computing resources to support dynamic spatial modeling of complex systems Find Spatial Modeling Environment at: http://sourceforge.net/projects/smodenv/
Posted in Theoretical
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BioJava
Posted in Life Sciences
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Mavric
Mavric is a python module for the manipulation and visualization of phylogenetic trees. Find Mavric at: http://www.bioinformatics.org/mavric/
Posted in Bioinformatics
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Genpak
GP and Arka are lightweight programs for manipulation of DNA / RNA / protein sequences. Find Genpak at: http://www.bioinformatics.org/genpak/
Posted in Bioinformatics
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DEODAS
DEgenerate Oligonucleotide Design & Analysis System (DEODAS), for designing and electronically analyzing consensus-degenerate oligonucleotides Find DEODAS at: http://deodas.sourceforge.net/
Posted in Bioinformatics
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E-CELL
E-CELL Simulation Environment (E-CELL SE) is a software package for cellular and biochemical modeling and simulation. Find E-CELL at: http://www.bioinformatics.org/e-cell/
Posted in Bioinformatics
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PhysioNet
Posted in Physiology
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