OpenScience / Software



Source code of DESTINY, a 2D and 3D SRAM/eDRAM/NVM Cache Modeling Tool

Posted on February 20, 2015 by Dan Gezelter

DESTINY models both 2D and 3D caches designed with SRAM, eDRAM, PCM, STT-RAM and ReRAM, thus covering both conventional and emerging technologies. In its purpose, it is similar to CACTI. Accompanying paper available at http://goo.gl/qzyWFE Category should be: Computer Science … Continue reading →

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Posted in Linear Algebra | Leave a comment

Source code of Parallel and Serial Red-Black SOR in Chapel, D and Go Languages

Posted on January 7, 2015 by Dan Gezelter

Successive over-relaxation (SOR) is a computationally intensive, yet extremely important iterative solver for linear systems. Due to recent growth in amount of data generated and increasing problem sizes, serial platforms have proved to be insufficient in providing the required computational … Continue reading →

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Posted in Linear Algebra | Leave a comment

Pathomx

Posted on November 19, 2014 by Dan Gezelter

Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. The software … Continue reading →

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Posted in Bioinformatics | Leave a comment

Quantum GIS

Posted on November 19, 2014 by Dan Gezelter

A Free and Open Source Geographic Information System QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs … Continue reading →

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Posted in Geography | Leave a comment

DAMASK the Dsseldorf Advanced Material Simulation Kit

Posted on November 18, 2014 by Dan Gezelter

DAMASK is a flexible and hierarchically structured model of material point behavior for the solution of (thermo-) elastoplastic boundary value problems. Its main purpose is the simulation of crystal plasticity within a finite-strain continuum mechanical framework. DAMASK is currently coupled … Continue reading →

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Posted in Engineering, Materials | Leave a comment

rOpenSci

Posted on September 14, 2014 by Dan Gezelter

At rOpenSci we are creating packages that allow access to data repositories through the R statistical programming environment that is already a familiar part of the workflow of many scientists. Our tools not only facilitate drawing data into an environment … Continue reading →

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Posted in Required Reading and Other Sites | Leave a comment

GitHub Science Showcase

Posted on September 14, 2014 by Dan Gezelter

Scientists around the world are working together to solve some of the biggest questions in research. Take a look at some of the examples featured here to find out more. Find GitHub Science Showcase at: https://github.com/showcases/science

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Posted in Required Reading and Other Sites | Leave a comment

Open Science Codefest

Posted on July 12, 2014 by Dan Gezelter

The National Center for Ecological Analysis and Synthesis (NCEAS) at UCSB is co-sponsoring the Open Science Codefest 2014, which aims to bring together researchers from ecology, biodiversity science, and other earth and environmental sciences with computer scientists, software engineers, and developers to collaborate … Continue reading →

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Posted in Conferences, open science, Science, Software | Tagged | Leave a comment

Energy system modelling with ASCEND

Posted on July 12, 2014 by Dan Gezelter

This a major release of the program. It introduces major modifications on the usage of Tonatiuh from previous versions of the program. In this new release, the user must decide what ray tracing results to save and how to save … Continue reading →

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Posted in Energy | Leave a comment

compute_fep

Posted on June 30, 2014 by Dan Gezelter

Free energy perturbation for LAMMPS, with soft-core pair potentials. Uses FEP, Thermodynamic Integration (TI), Mezei FDTI, and Bennet Acceptance Ratio methods. It can be used for alchemical transformations of pair potentials or charges in selected atoms. Find compute_fep at: https://github.com/agiliopadua/compute_fep

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Posted in Molecular Dynamics | Leave a comment