OpenScience / Software



Metro

Posted on June 29, 2004 by Dan Gezelter

Metro is an open source tool designed to evaluate the hausdorff distance between two triangular meshes. Metro adopts an approximated approach based on surface sampling and point-to-surface distance computation. Find Metro at: https://github.com/cnr-isti-vclab/vcglib/tree/master/apps/metro

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Posted in Geometry | 2 Comments

EChem++

Posted on June 18, 2004 by Dan Gezelter

a problem solving environment (PSE) for electrochemical experiments. This PSE is intended to provide support for the definition of electrochemical experiments, their control, simulation, and analysis. Find EChem++ at: http://www.echem.uni-tuebingen.de/~bs/echem/software/EChem++/echem++.shtml

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Posted in Electrochemistry | Leave a comment

PAL: Phylogenetic Analysis Library

Posted on May 26, 2004 by Dan Gezelter

The PAL project is a collaborative effort to provide a high quality Java library for use in molecular evolution and phylogenetics. Updates of PAL are released in regular intervals. At present (version 1.4) PAL consists of approximately 200 public classes/interfaces … Continue reading →

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Posted in Genetics | Leave a comment

JabRef bibliography manager

Posted on May 21, 2004 by Dan Gezelter

JabRef is a graphical application for managing bibliographical databases. The main focus is on BibTeX databases, but other database formats will be supported as well. JabRef is distributed under the terms of the Gnu General Public License, runs on all … Continue reading →

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Posted in Tools | Leave a comment

Nuclear Simulation Java Class Libraries

Posted on May 19, 2004 by Dan Gezelter

The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs. Find Nuclear Simulation Java Class Libraries … Continue reading →

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Posted in Nuclear | Leave a comment

Jam: A Java-based Data Acquisition System for Nuclear Physics

Posted on May 19, 2004 by Dan Gezelter

Jam is an easy-to-use self-contained data acquisition and analysis system for VME-based (or CAMAC-based) nuclear physics experiments. Jam has an easy, standard GUI for taking and sorting multi-parameter event-based data into 1-d and 2-d histograms. Find Jam: A Java-based Data … Continue reading →

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Posted in Nuclear | Leave a comment

XmdS

Posted on May 15, 2004 by Dan Gezelter

xmds – the eXtensible Multi-Dimensional Simulator – is a program for solving equations – fast. It is a tool to simplify the computer modelling of various systems, and is currently being developed within the Australian Centre for Quantum-Atom Optics at … Continue reading →

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Posted in Partial | Leave a comment

Quickplot

Posted on May 13, 2004 by Dan Gezelter

Quickplot is a fast interactive 2D plotter with infinite zooming, value picking, pipe input, and unlimited plots displayed. Quickplot is meant for looking at your data quickly and of secondary importance is making static pictures of your data. It’s a … Continue reading →

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PerlMol — Perl Modules for Molecular Chemistry

Posted on April 23, 2004 by Dan Gezelter

PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging". Find PerlMol — … Continue reading →

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Posted in Chemistry | Leave a comment

Open Source / Open Science

Posted on April 3, 2004 by Dan Gezelter

Coverage of the Event from Dr. Dobbs Journal Find Open Source / Open Science at: http://www.ddj.com/documents/s=891/ddj9975q/9975q.htm

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Posted in Required Reading and Other Sites | Leave a comment