OpenScience / Software



XVibs

Posted on March 24, 2001 by Dan Gezelter

A utility for animating molecular vibrations. Find XVibs at: http://xvibs.sourceforge.net/

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Posted in Molecule Viewers and Editors | Leave a comment

SciGraphica

Posted on March 22, 2001 by Dan Gezelter

Scientific Graphics and Data Manipulation. A WYSIWYG scientific graphics generator with publication quality PostScript output Find SciGraphica at: http://scigraphica.sourceforge.net/

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Posted in 2D Plotting | Leave a comment

KSEG

Posted on March 13, 2001 by Dan Gezelter

KSEG is an open-source Linux program for exploring Euclidean geometry. You create a construction, such as a triangle with a circumcenter, and then, as you drag verteces of the triangle, you can see the circumcenter moving in real time. Of … Continue reading →

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Posted in Geometry | Leave a comment

XLOGP

Posted on March 1, 2001 by Dan Gezelter

XLOGP is a method which can calculate the logP value for an organic compound from its topological structure Find XLOGP at: http://mdl.ipc.pku.edu.cn/drug_design/work/xlogp.html

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Posted in Biochemistry | Leave a comment

XNBC

Posted on March 1, 2001 by Dan Gezelter

XNBC is a software package for simulating biological neural networks. Find XNBC at: http://www.b3e.jussieu.fr/xnbc/

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Posted in Artificial Life | Leave a comment

XMolCalc

Posted on March 1, 2001 by Dan Gezelter

A molecular mass calculator for Unix/X11 Find XMolCalc at: http://www.unizh.ch/oci/group.pages/hesse/xmolcalc/index.html

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Posted in Chemistry | Leave a comment

XMakemol

Posted on March 1, 2001 by Dan Gezelter

XMakemol is a program written for UN*X operating systems in ANSI C using the X, Xt and Motif libraries. It can be used to view and manipulate atomic and molecular data given in xyz format. Find XMakemol at: http://www.nongnu.org/xmakemol/

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Posted in Molecule Viewers and Editors | Leave a comment

XBS

Posted on March 1, 2001 by Dan Gezelter

XBS is a simple but very useful program for plotting ball-and-sticks models of molecules or crystals under the X Window system. Find XBS at: http://www.ccl.net/chemistry/resources/software/X-WINDOW/xbs/index.shtml

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Posted in Molecule Viewers and Editors | Leave a comment

Wise2

Posted on March 1, 2001 by Dan Gezelter

Wise2 is package that is focused on comparing DNA sequences at the level of its conceptual translation, regardless of sequencing error and introns. Find Wise2 at: http://www.sanger.ac.uk/Software/Wise2/

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Posted in Bioinformatics | Leave a comment

VEGA

Posted on March 1, 2001 by Dan Gezelter

Visualization / Drug Design tool using standard packages. Find VEGA at: http://users.unimi.it/~ddl/vega/index.htm

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Posted in Biophysical | Leave a comment