OpenScience / Software



Lennard-Jones Gas Simulation

Posted on February 27, 2001 by Dan Gezelter

Lennard-Jones Gas Simulation Find Lennard-Jones Gas Simulation at: http://www.ibiblio.org/pub/Linux/science/chemistry/!INDEX.html

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Posted in Molecular Dynamics | Leave a comment

LigBuilder

Posted on February 27, 2001 by Dan Gezelter

LigBuilder is a multiple-purposed program written for structure-based drug design procedure. Based on the three-dimensional structure of the target protein, it can automatically build ligand molecules within the binding pocket and subsequently screen them Find LigBuilder at: http://mdl.ipc.pku.edu.cn/drug_design/work/ligbuilder.html

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Posted in Biochemistry | Leave a comment

Microsat

Posted on February 27, 2001 by Dan Gezelter

Microsat is a microsatellite distance program. Its calculations can take various aspects of the allele sizes into account. Find Microsat at: http://genetics.stanford.edu/hpgl/projects/microsat/

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Posted in Genetics | Leave a comment

MOLMOL

Posted on February 27, 2001 by Dan Gezelter

MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. Find MOLMOL at: http://www.mol.biol.ethz.ch/wuthrich/software/molmol/

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Posted in Molecule Viewers and Editors | Leave a comment

DNA/GUI

Posted on February 26, 2001 by Dan Gezelter

A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI

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Posted in Genetics | Leave a comment

Dynamite

Posted on February 26, 2001 by Dan Gezelter

Dynamite is a code generating language developed for sequence comparison methods. Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/

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Posted in Bioinformatics | Leave a comment

GAMMA

Posted on February 26, 2001 by Dan Gezelter

General Approach to Magnetic resonance Mathematical Analysis. Find GAMMA at: http://www.gamma.ethz.ch/index.html

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Posted in NMR | Leave a comment

gBioSeq

Posted on February 26, 2001 by Dan Gezelter

Biological sequence (ADN, protein) editor for GTK/Linux Find gBioSeq at: http://www.bioinformatics.org/project/?group_id=94

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Posted in Bioinformatics | Leave a comment

Gdis

Posted on February 26, 2001 by Dan Gezelter

Gdis is a GTK based program for the display of molecules. Find Gdis at: http://gdis.seul.org

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Posted in Molecule Viewers and Editors | Leave a comment

Cn3D

Posted on February 26, 2001 by Dan Gezelter

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI’s Entrez retrieval service. Find Cn3D at: http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

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Posted in Molecule Viewers and Editors | Leave a comment