OpenScience / Software



Pfam

Posted on February 27, 2001 by Dan Gezelter

Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Find Pfam at: http://pfam.sanger.ac.uk/

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Posted in Bioinformatics | Leave a comment

Lennard-Jones Gas Simulation

Posted on February 27, 2001 by Dan Gezelter

Lennard-Jones Gas Simulation Find Lennard-Jones Gas Simulation at: http://www.ibiblio.org/pub/Linux/science/chemistry/!INDEX.html

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Posted in Molecular Dynamics | Leave a comment

HMMER

Posted on February 27, 2001 by Dan Gezelter

Profile hidden Markov models for biological sequence analysis. Find HMMER at: http://hmmer.janelia.org/

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gOpenMol

Posted on February 27, 2001 by Dan Gezelter

gOpenMol is the graphical interface into the OpenMol set of computational chemistry programs Find gOpenMol at: http://www.csc.fi/english/pages/g0penMol

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Posted in Molecule Viewers and Editors | Leave a comment

Gdis

Posted on February 26, 2001 by Dan Gezelter

Gdis is a GTK based program for the display of molecules. Find Gdis at: http://gdis.seul.org

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gBioSeq

Posted on February 26, 2001 by Dan Gezelter

Biological sequence (ADN, protein) editor for GTK/Linux Find gBioSeq at: http://www.bioinformatics.org/project/?group_id=94

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GAMMA

Posted on February 26, 2001 by Dan Gezelter

General Approach to Magnetic resonance Mathematical Analysis. Find GAMMA at: http://www.gamma.ethz.ch/index.html

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Posted in NMR | Leave a comment

Dynamite

Posted on February 26, 2001 by Dan Gezelter

Dynamite is a code generating language developed for sequence comparison methods. Find Dynamite at: http://www.sanger.ac.uk/Software/Dynamite/

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DNA/GUI

Posted on February 26, 2001 by Dan Gezelter

A Graphical User Interface for Quantitative Imaging and Analysis of Electrophoretic Gels and Autoradiograms Find DNA/GUI at: http://wiki.bioinformatics.org/DNA-GUI

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Cn3D

Posted on February 26, 2001 by Dan Gezelter

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI’s Entrez retrieval service. Find Cn3D at: http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

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Posted in Molecule Viewers and Editors | Leave a comment