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AceDB

Posted on February 25, 2001 by Dan Gezelter

Acedb is a genome database system. Acedb is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. Find AceDB at: http://www.acedb.org/

Posted in Genetics | Leave a comment

ASAD

Posted on February 25, 2001 by Dan Gezelter

ASAD is a software package developed for creating and integrating chemistry schemes in atmospheric models without the need to write any FORTRAN code to solve the chemical rate equations. Find ASAD at: http://www.atm.ch.cam.ac.uk/acmsu/asad/index.html

Posted in Atmospheric | Leave a comment

autoseq

Posted on February 25, 2001 by Dan Gezelter

autoseq is a small package of base calling software for ABI automated DNA sequencers. It is intended as a starting point for researchers interested in new base calling algorithms. Find autoseq at: http://harts.net/reece/autoseq/

Posted in Bioinformatics | Leave a comment

Babel

Posted on February 25, 2001 by Dan Gezelter

Babel is a program designed to interconvert a number of file formats currently used in molecular modeling. Find Babel at: http://smog.com/chem/babel/

Posted in Chemistry | Leave a comment

BIGMAC

Posted on February 25, 2001 by Dan Gezelter

Beyond Impressive Goals of Mechanical Artificial Computations (i.e. a general purpose Configurational Bias Monte Carlo Code) Find BIGMAC at: http://molsim.chem.uva.nl/bigmac/

Posted in Monte Carlo methods | Leave a comment

BioMail

Posted on February 25, 2001 by Dan Gezelter

new references from Medline to your e-mail account Find BioMail at: http://biomail.sourceforge.net/biomail/

Posted in Medical Sciences | Leave a comment

B

Posted on February 25, 2001 by Dan Gezelter

A Java-based, on-line biomolecular modeling package. It should be useful in generating initial structures of biopolymers and small organic molecules. Simple force-field energy minimizations can be carried out in addition to simulated annealing with molecular dynamics. Find B at: http://www.scripps.edu/case/Biomer/index.html

Posted in Theoretical and Computational | Leave a comment

ChemCalc

Posted on February 25, 2001 by Dan Gezelter

ChemCalc is intended to be a calculator oriented towards chemistry. Find ChemCalc at: http://chemcalc.sourceforge.net/

Posted in Chemistry | Leave a comment

ChemSol

Posted on February 25, 2001 by Dan Gezelter

ChemSol is designed for the calculations of solvation free energies using the Langevin Dipoles (LD) solvation model, in which the solvent is approximated by polarizable dipoles fixed on a cubic grid. Find ChemSol at: http://laetro.usc.edu/chemsol/index.html

Posted in Theoretical and Computational | Leave a comment

GiNaC

Posted on February 24, 2001 by Dan Gezelter

An algebraic manipulation system Find GiNaC at: http://www.ginac.de/

Posted in Abstract Algebra | Leave a comment

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