OpenScience / Software



Emergent

Posted on February 24, 2001 by Dan Gezelter

Emergent (a major rewrite of PDP++) is a comprehensive simulation environment for creating complex, sophisticated models of the brain and cognitive processes using neural network models. These same networks can also be used for all kinds of other more pragmatic … Continue reading →

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Posted in Artificial Life, Neural Networks | Leave a comment

JAMA

Posted on February 24, 2001 by Dan Gezelter

JAMA is a basic linear algebra package for Java. Find JAMA at: http://math.nist.gov/javanumerics/jama/

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Posted in Linear Algebra | Leave a comment

MatPy

Posted on February 24, 2001 by Dan Gezelter

MatPy is a Python package for numerical computation and plotting with a MatLab-like interface. Find MatPy at: http://matpy.sourceforge.net/

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Posted in Linear Algebra | Leave a comment

Ecolab

Posted on February 24, 2001 by Dan Gezelter

Ecolab is both the name of a software package and a research project that is looking at the dynamics of evolution. Find Ecolab at: http://ecolab.sourceforge.net/

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Posted in Evolution and Population Genetics | Leave a comment

Bioperl

Posted on February 24, 2001 by Dan Gezelter

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. Find Bioperl at: http://bio.perl.org/

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Posted in Bioinformatics, Life Sciences | Leave a comment

StarFLIP++

Posted on February 24, 2001 by Dan Gezelter

A reusable iterative optimization library for combinatorial problems with fuzzy constraints Find StarFLIP++ at: http://www.dbai.tuwien.ac.at/proj/StarFLIP/

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Posted in Optimization | Leave a comment

BPKIT

Posted on February 24, 2001 by Dan Gezelter

BPKIT is a toolkit of block preconditioners for the iterative solution of linear systems. The most effective general purpose and black-box type of preconditioners are available, including block SSOR, block tridiagonal ILU, and the block extension of point ILU with … Continue reading →

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Posted in Linear Algebra | Leave a comment

Genpak

Posted on February 24, 2001 by Dan Gezelter

GP and Arka are lightweight programs for manipulation of DNA / RNA / protein sequences. Find Genpak at: http://www.bioinformatics.org/genpak/

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Posted in Bioinformatics | Leave a comment

The Hilbert Class Library

Posted on February 24, 2001 by Dan Gezelter

The Hilbert Class Library (HCL) is a collection of C++ classes representing basic mathematical objects such as vectors, linear and nonlinear operators, and functions. Find The Hilbert Class Library at: http://www.trip.caam.rice.edu/software/hcldoc/html/index.html

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Posted in Linear Algebra | Leave a comment

Nova

Posted on February 24, 2001 by Dan Gezelter

Nova is a free Integrated Observational Environment for astronomers. It combines an Ephemeris functionality with the capability of controlling modern "goto"Telescopes and popular CCD cameras. Find Nova at: http://nova.sourceforge.net/

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Posted in Astronomy | Leave a comment