OpenScience / Software



Bioperl

Posted on February 24, 2001 by Dan Gezelter

The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. Find Bioperl at: http://bio.perl.org/

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Posted in Bioinformatics, Life Sciences | Leave a comment

Nova

Posted on February 24, 2001 by Dan Gezelter

Nova is a free Integrated Observational Environment for astronomers. It combines an Ephemeris functionality with the capability of controlling modern "goto"Telescopes and popular CCD cameras. Find Nova at: http://nova.sourceforge.net/

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Posted in Astronomy | Leave a comment

The Hilbert Class Library

Posted on February 24, 2001 by Dan Gezelter

The Hilbert Class Library (HCL) is a collection of C++ classes representing basic mathematical objects such as vectors, linear and nonlinear operators, and functions. Find The Hilbert Class Library at: http://www.trip.caam.rice.edu/software/hcldoc/html/index.html

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Posted in Linear Algebra | Leave a comment

Mavric

Posted on February 24, 2001 by Dan Gezelter

Mavric is a python module for the manipulation and visualization of phylogenetic trees. Find Mavric at: http://www.bioinformatics.org/mavric/

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BPKIT

Posted on February 24, 2001 by Dan Gezelter

BPKIT is a toolkit of block preconditioners for the iterative solution of linear systems. The most effective general purpose and black-box type of preconditioners are available, including block SSOR, block tridiagonal ILU, and the block extension of point ILU with … Continue reading →

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Posted in Linear Algebra | Leave a comment

StarFLIP++

Posted on February 24, 2001 by Dan Gezelter

A reusable iterative optimization library for combinatorial problems with fuzzy constraints Find StarFLIP++ at: http://www.dbai.tuwien.ac.at/proj/StarFLIP/

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Posted in Optimization | Leave a comment

BioJava

Posted on February 24, 2001 by Dan Gezelter

Java tools for processing biological data Find BioJava at: http://www.biojava.org/

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Posted in Life Sciences | Leave a comment

MatrixMath

Posted on February 24, 2001 by Dan Gezelter

Matrix Math is a package currently in an early phase that allows auser to quickly and easily perform mathematical operations on matrices. Find MatrixMath at: http://foxxtrot.home.dhs.org/mtrxmath/

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Posted in Linear Algebra | Leave a comment

PyMat

Posted on February 24, 2001 by Dan Gezelter

An interface between Python and MATLAB Find PyMat at: http://claymore.engineer.gvsu.edu/~steriana/Python/pymat.html

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Posted in Linear Algebra | Leave a comment

Emergent

Posted on February 24, 2001 by Dan Gezelter

Emergent (a major rewrite of PDP++) is a comprehensive simulation environment for creating complex, sophisticated models of the brain and cognitive processes using neural network models. These same networks can also be used for all kinds of other more pragmatic … Continue reading →

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Posted in Artificial Life, Neural Networks | Leave a comment