OpenScience / Software



vhclmaps

Posted on February 24, 2001 by Dan Gezelter

a package of map viewers and spatial data servers that work with map databases like these from the USGS Find vhclmaps at: http://www.vectaport.com/vhclmaps/

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Posted in Geography | Leave a comment

Ghemical

Posted on February 23, 2001 by Dan Gezelter

Ghemical is a computational chemistry software package released under the GNU GPL. Ghemical can do all-atoms molecular mechanics (there is an experimental Tripos 5.2-like force field for organic molecules), and reduced protein models. Find Ghemical at: http://www.bioinformatics.org/ghemical/ghemical/index.html

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Posted in Molecular Dynamics, Molecule Viewers and Editors | Leave a comment

GPeriodic

Posted on February 23, 2001 by Dan Gezelter

a periodic table application. Find GPeriodic at: http://www.frantz.fi/software/gperiodic.php

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Posted in Periodic Tables | Leave a comment

Physis

Posted on February 23, 2001 by Dan Gezelter

Artificial life research platform to study the evolvability of different assembly-like computer languages. Find Physis at: http://sourceforge.net/projects/physis/

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Posted in Artificial Life | Leave a comment

OpenRasMol

Posted on February 23, 2001 by Dan Gezelter

RasMol is a program for molecular graphics visualisation originally developed by Roger Sayle. Find OpenRasMol at: http://www.OpenRasMol.org/

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Posted in Molecule Viewers and Editors | Leave a comment

EGO

Posted on February 23, 2001 by Dan Gezelter

A Program for Efficient Parallel Molecular Dynamics Find EGO at: http://heller.userweb.mwn.de/ego/

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Posted in Molecular Dynamics | Leave a comment

LabJ

Posted on February 23, 2001 by Dan Gezelter

LabJ (a.k.a Electronic Laboratory Notebook, ELN, Laboratory Journal) assists in planning chemical reactions and stores chemical information. Open Source, but it requires ISIS Desktop package from MSI. Find LabJ at: http://www.karolgrela.eu/labj/

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Posted in Chemistry | Leave a comment

VASP Data Viewer

Posted on February 23, 2001 by Dan Gezelter

A free, open source 3D viewer for molecular charge distributions. Find VASP Data Viewer at: http://vaspview.sourceforge.net/

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Posted in Molecule Viewers and Editors | Leave a comment

Flight Dynamics and Control Toolbox for Matlab/Simulink

Posted on February 23, 2001 by Dan Gezelter

A Matlab/Simulink toolbox for aircraft dynamics analysis and flight control system design. Features a detailed simulation model of the Beaver aircraft plus autopilot. Free download of software and user-manual. Find Flight Dynamics and Control Toolbox for Matlab/Simulink at: http://www.dutchroll.com/

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Posted in Aviation and Aeronautics | Leave a comment

NAB

Posted on February 23, 2001 by Dan Gezelter

The NAB molecular manipulation language – a computer language (specified through lex and yacc) that allows nucleic acid structures to be described in a hierarchical fashion, using a language similar to C or awk, but designed especially for the manipulatio … Continue reading →

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Posted in Theoretical and Computational | Leave a comment