OpenScience / Software / Tools



Tabula

Posted on March 22, 2017 by Dan Gezelter

If you’ve ever tried to do anything with data provided to you in PDFs, you know how painful it is — there’s no easy way to copy-and-paste rows of data out of PDF files.  Today we discovered a great open … Continue reading →

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sciNote

Posted on November 11, 2016 by Dan Gezelter

sciNote is a free and open source online lab notebook suitable for academia and industry. sciNote is not just an ELN but it is a scientific platform, where every scientist can safely store their data and share it with their … Continue reading →

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ELN – Electronic Lab Notebook

Posted on April 9, 2016 by Dan Gezelter

ELN is an Electronic Lab Notebook for scientists of all stripes ELN is great for: taking notes during experiments since it automatically saves your input every 10 seconds so that your notes will never be lost; keeping track of data … Continue reading →

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SciDraw

Posted on June 27, 2014 by Dan Gezelter

SciDraw is a system for preparing publication-quality scientific figures with Mathematica. SciDraw provides both a framework for structuring figures and tools for generating their content. SciDraw helps with generating figures involving mathematical plots, data plots, and diagrams. The package allows … Continue reading →

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codenode

Posted on June 27, 2014 by Dan Gezelter

Codenode is a notebook-style browser based interface to Python and Sage. It lets you write and run code, create plots, and organize your work into sections. You can manage many notebooks – add, delete, sort, and create folders. You can … Continue reading →

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Multigraph

Posted on March 21, 2013 by Dan Gezelter

Multigraph is a program for creating 2-dimensional scientific data graphs in web pages. It can read data in a variety of formats, and allows you to customize the appearance of the graph to your liking. Multigraph provides interactive pan and … Continue reading →

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XDAT: A Tool to plot Parallel Coordinates

Posted on April 26, 2012 by Dan Gezelter

XDAT (x-dimensional data analysis tool) reads column-based data in text / csv format and plots it using parallel coordinates. It is written in Java and released under the GPL. Find XDAT: A Tool to plot Parallel Coordinates at: http://www.xdat.org/

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Icy

Posted on January 4, 2012 by Dan Gezelter

Icy is an image analysis software primarily targeted at biological needs. It provides high-quality tools for biological image processing tasks, such as filtering (linear, nonlinear, morphological, etc.), cell segmentation, particles detection, tracking, multiple-class thresholding, measurements, microscope control, etc. It is … Continue reading →

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Eigen

Posted on April 20, 2011 by Dan Gezelter

Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. It provides high performance, arbitrary sized (and sparse) matricies, and excellent numerical stability. It is available under a LGPL3+/GPL2+ dual license. Find Eigen at: … Continue reading →

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Veusz

Posted on April 20, 2011 by Dan Gezelter

A publication-quality scientific plotting package built in Python, NumPy, and PyQt4. Find Veusz at: http://home.gna.org/veusz/

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