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QCADesigner - Home: QCADesigner is a design, layout and simulation tool for quantum-dot cellular automata (QCA). With powerful CAD capabilities QCADesigner facilitates the rapid design and layout of the most complex QCA circuits and systems. QCA is an emerging nanotechnology with potential applications in future computers. QCADesigner is an open source project to create the most powerful tool for QCA circuit simulation.
cadnano: Cadnano simplifies and enhances the process of designing three-dimensional DNA origami nanostructures. Through its user-friendly 2D and 3D interfaces it accelerates the creation of arbitrary designs. The embedded rules within Cadnano paired with the finite element analysis performed by cando, provide relative certainty of the stability of the structures.
NanoCAD: A freeware nanotech design system in Java

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