OpenScience / Software



Where did SAL go?

Posted on July 25, 2005 by Dan Gezelter

Back before we opened up shop at openscience.org, we used to browse the Scientific Applications for Linux (SAL) site at Kachinatech. It had some interesting links to programs we didn’t know much about. The old SAL mirrors are still around, … Continue reading →

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Posted in Meta, Software | Leave a comment

Koders

Posted on July 25, 2005 by Dan Gezelter

We just discovered this amazing new site, koders.com which lets you search a huge volume of open source software (and not just the scientific software). To demonstrate how useful it is, here’s a sample search for GPL’d software with the … Continue reading →

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Posted in Science, Software | 4 Comments

GENtle

Posted on July 12, 2005 by Dan Gezelter

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more. Find GENtle at: http://gentle.magnusmanske.de

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Posted in Bioinformatics | Leave a comment

Periodic Table Widget

Posted on July 5, 2005 by Dan Gezelter

Chris Fennell has released a new Periodic Table Dashboard Widget for those of you who have Mac OS X 10.4 installed. Check it out!

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ROC.KIT

Posted on May 25, 2005 by Dan Gezelter

ROC.KIT is an open-source Macintosh application allowing for automated calculation of ROC curves (Receiver-Operating-Charateristic) from continuous medical data like laboratory results. Find ROC.KIT at: http://roc-kit.sourceforge.net

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Posted in Medical Sciences | Leave a comment

SPINA

Posted on May 25, 2005 by Dan Gezelter

SPINA (Structure Parameter Inference Approach) is a method to calculate constant structure parameters of endocrine feedback control systems from hormone levels obtained in vivo. Software is available for different platforms. Find SPINA at: http://link.medinn.med.uni-muenchen.de/spina/en/

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Posted in Medical Sciences | Leave a comment

OpenFlower – Open Source CFD Software

Posted on May 25, 2005 by Dan Gezelter

OpenFlower (FLOW solvER) is a C++ open source CFD code mainly intended to solve the turbulent incompressible Navier-Stokes equations with a LES approach. It can deal with arbitrary complex 3D geometries with its finite volume approach (multi-elements meshes are accepeted). … Continue reading →

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Posted in Computational, Fluid, Fluid Dynamics | Leave a comment

EASY!

Posted on May 11, 2005 by Dan Gezelter

EASY! is an easy to use fortran code for constrained and unconstrained non-linear optimization. Very large problems can be handled. Find EASY! at: http://www.ime.unicamp.br/~martinez/software.html

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Posted in Optimization | Leave a comment

Zori

Posted on May 3, 2005 by Dan Gezelter

Zori is an open-source quantum monte carlo package for the electronic structure of atoms and molecules. Find Zori at: http://www.zori-code.com

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Posted in Ab Initio Quantum Chemistry | Leave a comment

Starlink Project

Posted on May 1, 2005 by Dan Gezelter

Starlink provide and coordinate leading edge interactive data reduction and analysis tools for use in research by UK Astronomy, STP and Solar scientists. Find Starlink Project at: http://www.starlink.ac.uk

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Posted in Astronomy | Leave a comment